Hnf1a syntax in mouse based on all samples
Summary of Hnf1a
Gene name: Hnf1a, HNF1 homeobox A
Number of Hnf1a PWM hits (motifs) on mouse genome: 235,216
Number of Hnf1a PWM hits (motifs) on mouse accessible genome: 57,231
Number of summits with Hnf1a motif per sample (min/median/max): 346 / 2,226 / 12,256
Number of summits with Hnf1a footprinting per sample (min/median/max): 8 / 82 / 1,364
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (159,655 extended summits (401bp) with Hnf1a motifs)
Footprinting-based (6,407 extended summits (401bp) with Hnf1a footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Hnf1a partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Hnf1a.
The number of Hnf1a partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Hnf1a.
View Hnf1a in a specific mouse sample

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