Npas4 syntax in mouse based on all samples
Summary of Npas4
Gene name: Npas4, neuronal PAS domain protein 4
Number of Npas4 PWM hits (motifs) on mouse genome: 7,526
Number of Npas4 PWM hits (motifs) on mouse accessible genome: 2,815
Number of summits with Npas4 motif per sample (min/median/max): 27 / 127 / 509
Number of summits with Npas4 footprinting per sample (min/median/max): 1 / 8 / 43
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (14,917 extended summits (401bp) with Npas4 motifs)
Footprinting-based (564 extended summits (401bp) with Npas4 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Npas4 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Npas4.
The number of Npas4 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Npas4.
View Npas4 in a specific mouse sample

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