SPDEF syntax in human based on all samples
Summary of SPDEF
Gene name: SPDEF, SAM pointed domain containing ETS transcription factor
Number of SPDEF PWM hits (motifs) on human genome: 315,104
Number of SPDEF PWM hits (motifs) on human accessible genome: 107,419
Number of summits with SPDEF motif per sample (min/median/max): 5,103 / 9,374 / 17,176
Number of summits with SPDEF footprinting per sample (min/median/max): 233 / 659 / 963
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (498,178 extended summits (401bp) with SPDEF motifs)
Footprinting-based (22,944 extended summits (401bp) with SPDEF footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of SPDEF partners on the same summit (Motif-based)
Density profile of all expressed TFs in human (Motif-based)
Red dot is SPDEF.
The number of SPDEF partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in human (Footprinting-based)
Red dot is SPDEF.
View SPDEF in a specific human sample

© TFSyntax 2024. This application is designed & developed by Yongbing Zhao.