Sim1 syntax in mouse based on all samples
Summary of Sim1
Gene name: Sim1, SIM bHLH transcription factor 1
Number of Sim1 PWM hits (motifs) on mouse genome: 9,288
Number of Sim1 PWM hits (motifs) on mouse accessible genome: 3,211
Number of summits with Sim1 motif per sample (min/median/max): 88 / 301 / 430
Number of summits with Sim1 footprinting per sample (min/median/max): 5 / 13 / 22
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (6,462 extended summits (401bp) with Sim1 motifs)
Footprinting-based (249 extended summits (401bp) with Sim1 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Sim1 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Sim1.
The number of Sim1 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Sim1.
View Sim1 in a specific mouse sample

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