Smarca5 syntax in mouse based on all samples
Summary of Smarca5
Gene name: Smarca5, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Number of Smarca5 PWM hits (motifs) on mouse genome: 157,301
Number of Smarca5 PWM hits (motifs) on mouse accessible genome: 36,933
Number of summits with Smarca5 motif per sample (min/median/max): 189 / 1,140 / 4,512
Number of summits with Smarca5 footprinting per sample (min/median/max): 7 / 61 / 257
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (681,950 extended summits (401bp) with Smarca5 motifs)
Footprinting-based (20,585 extended summits (401bp) with Smarca5 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Smarca5 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Smarca5.
The number of Smarca5 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Smarca5.
View Smarca5 in a specific mouse sample

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