Number of Hoxa1 PWM hits (motifs) on mouse genome:
764,072
Number of Hoxa1 PWM hits (motifs) on mouse accessible genome:
135,702
Number of summits with Hoxa1 motif per sample (min/median/max):
493 / 4,570 / 12,804
Number of summits with Hoxa1 footprinting per sample (min/median/max):
1 / 23 / 127
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (501,331 extended summits (401bp) with Hoxa1 motifs)
Footprinting-based (1,567 extended summits (401bp) with Hoxa1 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Hoxa1 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based) Red dot is Hoxa1.
The number of Hoxa1 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based) Red dot is Hoxa1.