Number of Hoxa9 PWM hits (motifs) on mouse genome:
422,407
Number of Hoxa9 PWM hits (motifs) on mouse accessible genome:
101,629
Number of summits with Hoxa9 motif per sample (min/median/max):
340 / 2,551 / 15,801
Number of summits with Hoxa9 footprinting per sample (min/median/max):
6 / 111 / 981
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (335,997 extended summits (401bp) with Hoxa9 motifs)
Footprinting-based (10,161 extended summits (401bp) with Hoxa9 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Hoxa9 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based) Red dot is Hoxa9.
The number of Hoxa9 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based) Red dot is Hoxa9.