Usf1 syntax in mouse based on all samples
Summary of Usf1
Gene name: Usf1, upstream transcription factor 1
Number of Usf1 PWM hits (motifs) on mouse genome: 127,782
Number of Usf1 PWM hits (motifs) on mouse accessible genome: 55,266
Number of summits with Usf1 motif per sample (min/median/max): 1,373 / 3,940 / 9,505
Number of summits with Usf1 footprinting per sample (min/median/max): 37 / 300 / 754
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (1,490,457 extended summits (401bp) with Usf1 motifs)
Footprinting-based (77,202 extended summits (401bp) with Usf1 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Usf1 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Usf1.
The number of Usf1 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Usf1.
View Usf1 in a specific mouse sample

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