Number of Zkscan4 PWM hits (motifs) on mouse genome:
52,212
Number of Zkscan4 PWM hits (motifs) on mouse accessible genome:
14,333
Number of summits with Zkscan4 motif per sample (min/median/max):
150 / 781 / 1,507
Number of summits with Zkscan4 footprinting per sample (min/median/max):
3 / 32 / 94
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (141,865 extended summits (401bp) with Zkscan4 motifs)
Footprinting-based (4,105 extended summits (401bp) with Zkscan4 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Zkscan4 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based) Red dot is Zkscan4.
The number of Zkscan4 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based) Red dot is Zkscan4.