BRCA1 syntax in human based on all samples
Summary of BRCA1
Gene name: BRCA1, BRCA1 DNA repair associated
Number of BRCA1 PWM hits (motifs) on human genome: 97,710
Number of BRCA1 PWM hits (motifs) on human accessible genome: 18,675
Number of summits with BRCA1 motif per sample (min/median/max): 600 / 1,249 / 2,616
Number of summits with BRCA1 footprinting per sample (min/median/max): 24 / 118 / 240
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (444,530 extended summits (401bp) with BRCA1 motifs)
Footprinting-based (26,299 extended summits (401bp) with BRCA1 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of BRCA1 partners on the same summit (Motif-based)
Density profile of all expressed TFs in human (Motif-based)
Red dot is BRCA1.
The number of BRCA1 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in human (Footprinting-based)
Red dot is BRCA1.
View BRCA1 in a specific human sample

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