Clock syntax in mouse based on all samples
Summary of Clock
Gene name: Clock, clock circadian regulator
Number of Clock PWM hits (motifs) on mouse genome: 113,812
Number of Clock PWM hits (motifs) on mouse accessible genome: 37,570
Number of summits with Clock motif per sample (min/median/max): 579 / 2,040 / 5,604
Number of summits with Clock footprinting per sample (min/median/max): 18 / 138 / 364
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (879,932 extended summits (401bp) with Clock motifs)
Footprinting-based (37,677 extended summits (401bp) with Clock footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Clock partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Clock.
The number of Clock partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Clock.
View Clock in a specific mouse sample

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