Hif1a syntax in mouse based on all samples
Summary of Hif1a
Gene name: Hif1a, hypoxia inducible factor 1 subunit alpha
Number of Hif1a PWM hits (motifs) on mouse genome: 63,532
Number of Hif1a PWM hits (motifs) on mouse accessible genome: 28,059
Number of summits with Hif1a motif per sample (min/median/max): 1,098 / 2,677 / 5,554
Number of summits with Hif1a footprinting per sample (min/median/max): 55 / 179 / 403
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (1,104,609 extended summits (401bp) with Hif1a motifs)
Footprinting-based (51,862 extended summits (401bp) with Hif1a footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Hif1a partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Hif1a.
The number of Hif1a partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Hif1a.
View Hif1a in a specific mouse sample

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