Hoxa6 syntax in mouse based on all samples
Summary of Hoxa6
Gene name: Hoxa6, homeobox A6
Number of Hoxa6 PWM hits (motifs) on mouse genome: 61,878
Number of Hoxa6 PWM hits (motifs) on mouse accessible genome: 17,267
Number of summits with Hoxa6 motif per sample (min/median/max): 39 / 473 / 2,742
Number of summits with Hoxa6 footprinting per sample (min/median/max): 1 / 29 / 124
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (69,629 extended summits (401bp) with Hoxa6 motifs)
Footprinting-based (2,018 extended summits (401bp) with Hoxa6 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Hoxa6 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Hoxa6.
The number of Hoxa6 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Hoxa6.
View Hoxa6 in a specific mouse sample

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