Hoxd11 syntax in mouse based on all samples
Summary of Hoxd11
Gene name: Hoxd11, homeobox D11
Number of Hoxd11 PWM hits (motifs) on mouse genome: 17,602
Number of Hoxd11 PWM hits (motifs) on mouse accessible genome: 4,477
Number of summits with Hoxd11 motif per sample (min/median/max): 29 / 372 / 839
Number of summits with Hoxd11 footprinting per sample (min/median/max): 3 / 19 / 33
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (7,992 extended summits (401bp) with Hoxd11 motifs)
Footprinting-based (249 extended summits (401bp) with Hoxd11 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Hoxd11 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Hoxd11.
The number of Hoxd11 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Hoxd11.
View Hoxd11 in a specific mouse sample

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