Hoxd13 syntax in mouse based on all samples
Summary of Hoxd13
Gene name: Hoxd13, homeobox D13
Number of Hoxd13 PWM hits (motifs) on mouse genome: 468,565
Number of Hoxd13 PWM hits (motifs) on mouse accessible genome: 61,308
Number of summits with Hoxd13 motif per sample (min/median/max): 569 / 2,122 / 6,185
Number of summits with Hoxd13 footprinting per sample (min/median/max): 13 / 80 / 447
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (77,167 extended summits (401bp) with Hoxd13 motifs)
Footprinting-based (2,077 extended summits (401bp) with Hoxd13 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Hoxd13 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Hoxd13.
The number of Hoxd13 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Hoxd13.
View Hoxd13 in a specific mouse sample

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