Number of Hoxd3 PWM hits (motifs) on mouse genome:
53,973
Number of Hoxd3 PWM hits (motifs) on mouse accessible genome:
16,424
Number of summits with Hoxd3 motif per sample (min/median/max):
42 / 934 / 3,554
Number of summits with Hoxd3 footprinting per sample (min/median/max):
1 / 44 / 160
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (68,558 extended summits (401bp) with Hoxd3 motifs)
Footprinting-based (2,192 extended summits (401bp) with Hoxd3 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Hoxd3 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based) Red dot is Hoxd3.
The number of Hoxd3 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based) Red dot is Hoxd3.