Hoxd9 syntax in mouse based on all samples
Summary of Hoxd9
Gene name: Hoxd9, homeobox D9
Number of Hoxd9 PWM hits (motifs) on mouse genome: 229,718
Number of Hoxd9 PWM hits (motifs) on mouse accessible genome: 46,691
Number of summits with Hoxd9 motif per sample (min/median/max): 72 / 1,675 / 6,625
Number of summits with Hoxd9 footprinting per sample (min/median/max): 2 / 72 / 382
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (148,770 extended summits (401bp) with Hoxd9 motifs)
Footprinting-based (4,270 extended summits (401bp) with Hoxd9 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Hoxd9 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Hoxd9.
The number of Hoxd9 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Hoxd9.
View Hoxd9 in a specific mouse sample

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