Msx1 syntax in mouse based on all samples
Summary of Msx1
Gene name: Msx1, msh homeobox 1
Number of Msx1 PWM hits (motifs) on mouse genome: 169,864
Number of Msx1 PWM hits (motifs) on mouse accessible genome: 36,034
Number of summits with Msx1 motif per sample (min/median/max): 69 / 1,141 / 5,792
Number of summits with Msx1 footprinting per sample (min/median/max): 1 / 55 / 302
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (271,190 extended summits (401bp) with Msx1 motifs)
Footprinting-based (7,362 extended summits (401bp) with Msx1 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Msx1 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Msx1.
The number of Msx1 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Msx1.
View Msx1 in a specific mouse sample

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