Msx2 syntax in mouse based on all samples
Summary of Msx2
Gene name: Msx2, msh homeobox 2
Number of Msx2 PWM hits (motifs) on mouse genome: 102,031
Number of Msx2 PWM hits (motifs) on mouse accessible genome: 23,391
Number of summits with Msx2 motif per sample (min/median/max): 88 / 918 / 2,595
Number of summits with Msx2 footprinting per sample (min/median/max): 1 / 46 / 149
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (92,591 extended summits (401bp) with Msx2 motifs)
Footprinting-based (2,490 extended summits (401bp) with Msx2 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Msx2 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Msx2.
The number of Msx2 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Msx2.
View Msx2 in a specific mouse sample

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