Nkx2-1 syntax in mouse based on all samples
Summary of Nkx2-1
Gene name: Nkx2-1, NK2 homeobox 1
Number of Nkx2-1 PWM hits (motifs) on mouse genome: 365,460
Number of Nkx2-1 PWM hits (motifs) on mouse accessible genome: 100,561
Number of summits with Nkx2-1 motif per sample (min/median/max): 3,378 / 7,346 / 13,453
Number of summits with Nkx2-1 footprinting per sample (min/median/max): 190 / 432 / 677
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (261,169 extended summits (401bp) with Nkx2-1 motifs)
Footprinting-based (9,350 extended summits (401bp) with Nkx2-1 footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Nkx2-1 partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Nkx2-1.
The number of Nkx2-1 partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Nkx2-1.
View Nkx2-1 in a specific mouse sample

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