RARA syntax in human based on all samples
Summary of RARA
Gene name: RARA, retinoic acid receptor alpha
Number of RARA PWM hits (motifs) on human genome: 1,198,682
Number of RARA PWM hits (motifs) on human accessible genome: 334,732
Number of summits with RARA motif per sample (min/median/max): 3,551 / 12,240 / 56,482
Number of summits with RARA footprinting per sample (min/median/max): 198 / 785 / 3,188
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (5,769,178 extended summits (401bp) with RARA motifs)
Footprinting-based (229,134 extended summits (401bp) with RARA footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of RARA partners on the same summit (Motif-based)
Density profile of all expressed TFs in human (Motif-based)
Red dot is RARA.
The number of RARA partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in human (Footprinting-based)
Red dot is RARA.
View RARA in a specific human sample

© TFSyntax 2024. This application is designed & developed by Yongbing Zhao.