Rxra syntax in mouse based on all samples
Summary of Rxra
Gene name: Rxra, retinoid X receptor alpha
Number of Rxra PWM hits (motifs) on mouse genome: 1,299,739
Number of Rxra PWM hits (motifs) on mouse accessible genome: 368,069
Number of summits with Rxra motif per sample (min/median/max): 2,799 / 14,200 / 41,133
Number of summits with Rxra footprinting per sample (min/median/max): 129 / 863 / 2,830
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (6,188,632 extended summits (401bp) with Rxra motifs)
Footprinting-based (225,627 extended summits (401bp) with Rxra footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Rxra partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Rxra.
The number of Rxra partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Rxra.
View Rxra in a specific mouse sample

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