Spdef syntax in mouse based on all samples
Summary of Spdef
Gene name: Spdef, SAM pointed domain containing ETS transcription factor
Number of Spdef PWM hits (motifs) on mouse genome: 74,948
Number of Spdef PWM hits (motifs) on mouse accessible genome: 21,624
Number of summits with Spdef motif per sample (min/median/max): 596 / 1,847 / 2,628
Number of summits with Spdef footprinting per sample (min/median/max): 30 / 108 / 160
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (55,989 extended summits (401bp) with Spdef motifs)
Footprinting-based (2,188 extended summits (401bp) with Spdef footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Spdef partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Spdef.
The number of Spdef partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Spdef.
View Spdef in a specific mouse sample

© TFSyntax 2023. This application is designed & developed by Yongbing Zhao.