Srf syntax in mouse based on all samples
Summary of Srf
Gene name: Srf, serum response factor
Number of Srf PWM hits (motifs) on mouse genome: 984,744
Number of Srf PWM hits (motifs) on mouse accessible genome: 196,152
Number of summits with Srf motif per sample (min/median/max): 705 / 5,728 / 19,702
Number of summits with Srf footprinting per sample (min/median/max): 14 / 145 / 674
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (3,820,494 extended summits (401bp) with Srf motifs)
Footprinting-based (51,453 extended summits (401bp) with Srf footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Srf partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Srf.
The number of Srf partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Srf.
View Srf in a specific mouse sample

© TFSyntax 2024. This application is designed & developed by Yongbing Zhao.