Sry syntax in mouse based on all samples
Summary of Sry
Gene name: Sry, sex determining region Y
Number of Sry PWM hits (motifs) on mouse genome: 768,269
Number of Sry PWM hits (motifs) on mouse accessible genome: 128,881
Number of summits with Sry motif per sample (min/median/max): 2,874 / 2,874 / 2,874
Number of summits with Sry footprinting per sample (min/median/max): 68 / 68 / 68
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (13,490 extended summits (401bp) with Sry motifs)
Footprinting-based (90 extended summits (401bp) with Sry footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of Sry partners on the same summit (Motif-based)
Density profile of all expressed TFs in mouse (Motif-based)
Red dot is Sry.
The number of Sry partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in mouse (Footprinting-based)
Red dot is Sry.
View Sry in a specific mouse sample

© TFSyntax 2024. This application is designed & developed by Yongbing Zhao.