VDR syntax in human based on all samples
Summary of VDR
Gene name: VDR, vitamin D receptor
Number of VDR PWM hits (motifs) on human genome: 627,771
Number of VDR PWM hits (motifs) on human accessible genome: 238,742
Number of summits with VDR motif per sample (min/median/max): 3,723 / 12,379 / 34,506
Number of summits with VDR footprinting per sample (min/median/max): 202 / 814 / 1,878
Positional profile of TF binding sites
For each transcription factor, positional profile shows where the factor will bind on the regulatory elements. The positions are relative to those summits of regulatory elements. The data are based on motif or footprinting data.
Motif-based (3,758,525 extended summits (401bp) with VDR motifs)
Footprinting-based (163,825 extended summits (401bp) with VDR footprinting)
Density profile of TF binding sites
For each transcription factor, density profile shows how many partners (expressed TFs) may bind to the same regulatory elements. The data are based on motifs or footprinting within 201bp summits.
The number of VDR partners on the same summit (Motif-based)
Density profile of all expressed TFs in human (Motif-based)
Red dot is VDR.
The number of VDR partners on the same summit (Footprinting-based)
Density profile of all expressed TFs in human (Footprinting-based)
Red dot is VDR.
View VDR in a specific human sample

© TFSyntax 2024. This application is designed & developed by Yongbing Zhao.